Module BC_DNA

module BC_DNA: sig  end

Deprecated. Use BC_NA module instead
Operations on DNA sequences

val complement_str : string -> string

return the DNA reverse complement

val complement_ambiguous_str : string -> string

return the DNA reverse complement for ambiguous DNA

DNA treating functions without strict types.

Here are functions that can treat DNA characters as integer numbers in this module. This modules assumes following char <-> integer conversions.

A or a <-> 0

T or t <-> 1

C or c <-> 2

G or g <-> 3

N or n <-> 4

val dna_to_int : char -> int

dna_to_int ch converts a DNA character into a correspoinding integer value.

val int_to_dna : int -> char

ind_to_dna ch converts a integer value into a correspoinding DNA character.