Module BC_Indexing

module BC_Indexing: sig  end

Alphabet Indexing functions
Author(s): Hideo Bannai

the type for an alphabet indexing

val indexing_alphabet : indexing -> string

return indexing alphabet "0...8"

val convfunc_of_ind : indexing -> char -> char

return function: char -> char corresponding to the indexing

val conv : indexing -> string -> string

convert a string according to an indexing

val create : int -> (string * int) list -> indexing

create a indexing with indexing alphabet size, and list of classifications e.g: create 2 [("ab", 0); ("def", 1)] creates a indexing of indexing alphabet size 2 which maps "ab" to 0, and "def" to 1, and other characters to 2. The alphabet is automatically extracted from the list. Raises Invalid_argument if a character appears in multiple classifications, or if the indexing value is greater than size

val create_random : string -> int -> indexing

create a random indexing from alphabet and indexing size string should contain letters of the original alphabet indexing size greater than 0 and less than 10, otherwise raises Invalid_argument

val neighbors : indexing -> indexing list

generate the neighborhood of a given indexing

val to_string : indexing -> string

create string of indexing

val serialize : indexing -> string

create internal representation of indexing. (so can be cut-and-pasted into code)