sig
val string_to_string_content :
?filename:string ->
unit ->
(string,
([ `browser of
[ `hide of [ `all ]
| `position of string * int * int
| `unknown of string ]
| `comment of string
| `content of string
| `track of (string * string) list ], [> Biocaml_track.Error.parsing ])
Biocaml_internal_utils.Result.t)
Biocaml_transform.t
val string_content_to_string :
?add_content_new_line:bool ->
unit ->
([ `browser of
[ `hide of [ `all ]
| `position of string * int * int
| `unknown of string ]
| `comment of string
| `content of string
| `track of (string * string) list ], string)
Biocaml_transform.t
val string_to_wig :
?filename:string ->
unit ->
(string,
([ `bed_graph_value of Biocaml_wig.bed_graph_value
| `browser of
[ `hide of [ `all ]
| `position of string * int * int
| `unknown of string ]
| `comment of string
| `fixed_step_state_change of string * int * int * int option
| `fixed_step_value of float
| `track of (string * string) list
| `variable_step_state_change of string * int option
| `variable_step_value of int * float ],
[> `cannot_parse_key_values of Biocaml_internal_utils.Pos.t * string
| `empty_line of Biocaml_internal_utils.Pos.t
| `incomplete_input of
Biocaml_internal_utils.Pos.t * string list * string option
| `missing_chrom_value of Biocaml_internal_utils.Pos.t * string
| `missing_start_value of Biocaml_internal_utils.Pos.t * string
| `missing_step_value of Biocaml_internal_utils.Pos.t * string
| `unrecognizable_line of Biocaml_internal_utils.Pos.t * string list
| `wrong_bed_graph_value of Biocaml_internal_utils.Pos.t * string
| `wrong_browser_position of Biocaml_internal_utils.Pos.t * string
| `wrong_fixed_step_value of Biocaml_internal_utils.Pos.t * string
| `wrong_key_value_format of (string * string) list * string * string
| `wrong_span_value of Biocaml_internal_utils.Pos.t * string
| `wrong_start_value of Biocaml_internal_utils.Pos.t * string
| `wrong_step_value of Biocaml_internal_utils.Pos.t * string
| `wrong_variable_step_value of Biocaml_internal_utils.Pos.t * string ])
Biocaml_internal_utils.Result.t)
Biocaml_transform.t
val wig_to_string :
unit ->
([ `bed_graph_value of Biocaml_wig.bed_graph_value
| `browser of
[ `hide of [ `all ]
| `position of string * int * int
| `unknown of string ]
| `comment of string
| `fixed_step_state_change of string * int * int * int option
| `fixed_step_value of float
| `track of (string * string) list
| `variable_step_state_change of string * int option
| `variable_step_value of int * float ], string)
Biocaml_transform.t
val string_to_gff :
?filename:string ->
tags:Biocaml_gff.Tags.t ->
unit ->
(string,
([ `browser of
[ `hide of [ `all ]
| `position of string * int * int
| `unknown of string ]
| `comment of string
| `record of Biocaml_gff.record
| `track of (string * string) list ],
[> `cannot_parse_float of Biocaml_internal_utils.Pos.t * string
| `cannot_parse_int of Biocaml_internal_utils.Pos.t * string
| `cannot_parse_strand of Biocaml_internal_utils.Pos.t * string
| `cannot_parse_string of Biocaml_internal_utils.Pos.t * string
| `empty_line of Biocaml_internal_utils.Pos.t
| `incomplete_input of
Biocaml_internal_utils.Pos.t * string list * string option
| `wrong_attributes of Biocaml_internal_utils.Pos.t * string
| `wrong_browser_position of Biocaml_internal_utils.Pos.t * string
| `wrong_key_value_format of (string * string) list * string * string
| `wrong_row of Biocaml_internal_utils.Pos.t * string
| `wrong_url_escaping of Biocaml_internal_utils.Pos.t * string ])
Biocaml_internal_utils.Result.t)
Biocaml_transform.t
val gff_to_string :
tags:Biocaml_gff.Tags.t ->
unit ->
([ `browser of
[ `hide of [ `all ]
| `position of string * int * int
| `unknown of string ]
| `comment of string
| `record of Biocaml_gff.record
| `track of (string * string) list ], string)
Biocaml_transform.t
val string_to_bed :
?filename:string ->
?more_columns:Biocaml_bed.parsing_spec ->
unit ->
(string,
([ `browser of
[ `hide of [ `all ]
| `position of string * int * int
| `unknown of string ]
| `comment of string
| `content of Biocaml_bed.item
| `track of (string * string) list ],
[> `bed of Biocaml_bed.Error.parsing_base
| `incomplete_input of
Biocaml_internal_utils.Pos.t * string list * string option
| `wrong_browser_position of Biocaml_internal_utils.Pos.t * string
| `wrong_key_value_format of (string * string) list * string * string ])
Biocaml_internal_utils.Result.t)
Biocaml_transform.t
val bed_to_string :
unit ->
([ `browser of
[ `hide of [ `all ]
| `position of string * int * int
| `unknown of string ]
| `comment of string
| `content of Biocaml_bed.item
| `track of (string * string) list ], string)
Biocaml_transform.t
end