sig
exception Bad of string
type strand = Biocaml_gff.strand = Sense | Antisense | Unknown | Unstranded
type attribute =
Biocaml_gff.attribute =
TagValue of string * string
| Something of string
type row =
Biocaml_gff.row = {
chr : string;
source : string;
feature : string;
pos : int * int;
score : float option;
strand : strand;
phase : int option;
attributes : attribute list;
}
type t = Biocaml_gff.t
val of_file :
?chr_map:(string -> string) ->
?version:int -> ?strict:bool -> string -> t
val of_list : row list -> t
val fold : ('a -> row -> 'a) -> 'a -> t -> 'a
val iter : (row -> unit) -> t -> unit
val fold_file :
?version:int -> ?strict:bool -> ('a -> row -> 'a) -> 'a -> string -> 'a
val iter_file :
?version:int -> ?strict:bool -> (row -> unit) -> string -> unit
val to_list : t -> row list
val enum : t -> row BatEnum.t
val to_map : t -> row list Biocaml_std.StringMap.t
val map_of_file :
?version:int ->
?strict:bool -> string -> row list Biocaml_std.StringMap.t
val row_to_string : ?version:int -> row -> string
val to_channel : ?version:int -> t -> out_channel -> unit
val to_file : ?version:int -> t -> string -> unit
val attribute_names : row -> string list
val get_attribute : row -> string -> string
val get_attributel : row -> string -> string list
val has_attribute : row -> string -> bool
val add_attribute : string -> string -> row -> row
val set_attribute : string -> string -> row -> row
val delete_attribute : string -> row -> row
val index_by_attribute : string -> t -> (string, row list) Hashtbl.t
end