Module Biocaml.Bed (.ml)

module Bed: Biocaml_bed

type item = string * int * int * Biocaml_table.Row.t

The type of BED data stream items.

type parsing_spec = [ `enforce of Biocaml_table.Row.t_type | `strings ]

The specification of how to parse the remaining columns.

module Error: sig .. end

val item_of_line : how:parsing_spec ->
       Biocaml_lines.item ->
       (item, [> Error.parsing ]) Core.Result.t

Basic parsing of a single line.

val item_to_line : item -> Biocaml_lines.item

Basic “printing” of one single item.

module Transform: sig .. end

val item_of_sexp : Sexplib.Sexp.t -> item

val sexp_of_item : item -> Sexplib.Sexp.t

The type of BED data stream items.

val parsing_spec_of_sexp : Sexplib.Sexp.t -> parsing_spec

val parsing_spec_of_sexp__ : Sexplib.Sexp.t -> parsing_spec

val sexp_of_parsing_spec : parsing_spec -> Sexplib.Sexp.t

The specification of how to parse the remaining columns.

Definitions of error types (with sexp)

Basic parsing of a single line.

Basic “printing” of one single item.

Create a Biocaml_transform.t-based parser, while providing the format of the additional columns (default `strings).

Create a Biocaml_transform.t which “prints” BED data (reminder: includes ends-of-line).