Module Biocaml_tags.Input_transform (.ml)

module Input_transform: 
sig
type input_error = [ `bam of Biocaml_bam.Error.raw_bam
| `bam_to_item of Biocaml_bam.Error.raw_to_item
| `bed of Biocaml_bed.Error.parsing
| `fasta of Biocaml_fasta.Error.t
| `fasta_lengths_mismatch
| `fastq of Biocaml_fastq.Error.t
| `gff of Biocaml_gff.Error.parsing
| `sam of Biocaml_sam.Error.string_to_raw
| `sam_to_item of Biocaml_sam.Error.raw_to_item
| `table_row of Biocaml_table.Row.Error.t
| `unzip of Biocaml_zip.Error.unzip
| `wig of Biocaml_wig.Error.parsing ]
An union of all possible input errors.
type tags = Biocaml_tags.t 
An alias of the type Tags.t.
type t = [ `file_to_bed of
(string,
(Biocaml_bed.item, input_error)
Core.Result.t)
Biocaml_transform.t
| `file_to_char_fasta of
(string,
(Biocaml_fasta.char_seq Biocaml_fasta.raw_item,
input_error)
Core.Result.t)
Biocaml_transform.t
| `file_to_fastq of
(string,
(Biocaml_fastq.item, input_error)
Core.Result.t)
Biocaml_transform.t
| `file_to_gff of
(string,
(Biocaml_gff.item, input_error)
Core.Result.t)
Biocaml_transform.t
| `file_to_int_fasta of
(string,
(Biocaml_fasta.int_seq Biocaml_fasta.raw_item,
input_error)
Core.Result.t)
Biocaml_transform.t
| `file_to_sam_item of
(string,
(Biocaml_sam.item, input_error)
Core.Result.t)
Biocaml_transform.t
| `file_to_table of
(string,
(Biocaml_table.Row.t, input_error)
Core.Result.t)
Biocaml_transform.t
| `file_to_wig of
(string,
(Biocaml_wig.item, input_error)
Core.Result.t)
Biocaml_transform.t
| `two_files_to_fastq of
(string * string,
(Biocaml_fastq.item, input_error)
Core.Result.t)
Biocaml_transform.t ]
The general input transformation.
val name : t -> string
Get a string describing and input transform (for debug/display purposes).
val from_tags : ?zlib_buffer_size:int ->
tags ->
(t, [> `not_implemented of string ])
Core.Result.t
Create an Input_transform.t from tags describing the format.
val sexp_of_input_error : input_error -> Sexplib.Sexp.t
end