Module Biocaml_jaspar (.ml)

Access to Jaspar database

module Biocaml_jaspar:

sig

type collection =

`\|`	`Core`
`\|`	`Phylofacts`
`\|`	`CNE`
`\|`	`PBM`
`\|`	`PBM_HOMEO`
`\|`	`PBM_HLH`
`\|`	`FAM`
`\|`	`SPLICE`
`\|`	`POLII`

The possible kinds of motifs.

type motif = private {

	`id : string;`
	`jaspar_id : string;`
	`collection : collection;`
	`factor_name : string;`
	`factor_class : string;`
	`family : string option;`
	`comment : string option;`
	`medline : string;`
	`matrix : int array array;`

}

A Jaspar motif

val load : string -> motif list

Loads a database in SQL dump format, as available at Jaspar website

end