Module Biocaml.Fasta

module Fasta: Biocaml_fasta

exception Error of string

type record = string * string

Header and content. Multiline content is concatenated into a single string. All characters other than newline are retained.

type recordi = string * int list

Header and integers. Content is assumed to be space-separated integers, possibly spanning multiple lines.

val enum_input : Batteries.IO.input ->
       Biocaml_comments.t * record Batteries.Enum.t

Returns comments and enumeration of fasta records in given input.

val enum_of_file : string -> Biocaml_comments.t * record Batteries.Enum.t

Returns comments and enumeration of fasta records in given path.

val enum_inputi : Batteries.IO.input ->
       Biocaml_comments.t * recordi Batteries.Enum.t