Module Biocaml_fasta.Error (.ml)

All errors generated by any function in the Fasta module are defined here. Type t is the union of all errors, and subsets of this are defined as needed to specify precise return types for various functions.

• `empty_line pos - an empty line was found in a position pos where it is not allowed.

• `incomplete_input (lines,s) - the input ended prematurely. Trailing contents, which cannot be used to fully construct an item, are provided: lines is the complete lines parsed and s is any final string not ending in a newline.

• `malformed_partial_sequence s - indicates that s could not be parsed into a valid (partial) sequence value.

• `sequence_is_too_long s - indicates that s is longer than allowed by `max_items_per_line.

• `unnamed_char_seq x - a char_seq value x was found without a preceding header section.

• `unnamed_int_seq x - an int_seq value x was found without a preceding header section.

type string_to_raw_item = [ `empty_line of Biocaml_pos.t
       | `incomplete_input of Biocaml_pos.t * string list * string option
       | `malformed_partial_sequence of Biocaml_pos.t * string
       | `sequence_is_too_long of Biocaml_pos.t * string ] 

type t = [ `empty_line of Biocaml_pos.t
       | `incomplete_input of Biocaml_pos.t * string list * string option
       | `malformed_partial_sequence of Biocaml_pos.t * string
       | `sequence_is_too_long of Biocaml_pos.t * string
       | `unnamed_char_seq of Biocaml_fasta.char_seq
       | `unnamed_int_seq of Biocaml_fasta.int_seq ] 

val sexp_of_string_to_raw_item : string_to_raw_item -> Sexplib.Sexp.t

val string_to_raw_item_of_sexp : Sexplib.Sexp.t -> string_to_raw_item

val sexp_of_t : t -> Sexplib.Sexp.t

val t_of_sexp : Sexplib.Sexp.t -> t