Module Biocaml_fastq.Error (.ml)

All errors generated by any function in the Fastq module are defined here.

• `sequence_and_qualities_do_not_match (position, sequence, qualities) - given sequence and qualities at given position are of different lengths.

• `wrong_name_line x - name line x does not start with '@'

• `wrong_comment_line _ - comment line does not start with '+'

• `incomplete_input (position, lines, s) - the input ended prematurely. Trailing contents, which cannot be used to fully construct an item, are provided: lines is any complete lines parsed and s is any final string not ending in a newline.

type fasta_pair_to_fastq = [ `cannot_convert_to_phred_score of int list
       | `sequence_names_mismatch of string * string ] 

type parsing = [ `incomplete_input of Biocaml_pos.t * string list * string option
       | `sequence_and_qualities_do_not_match of Biocaml_pos.t * string * string
       | `wrong_comment_line of Biocaml_pos.t * string
       | `wrong_name_line of Biocaml_pos.t * string ] 

type t = [ `cannot_convert_to_phred_score of int list
       | `incomplete_input of Biocaml_pos.t * string list * string option
       | `sequence_and_qualities_do_not_match of Biocaml_pos.t * string * string
       | `sequence_names_mismatch of string * string
       | `wrong_comment_line of Biocaml_pos.t * string
       | `wrong_name_line of Biocaml_pos.t * string ] 

val t_of_sexp : Sexplib.Sexp.t -> t

val sexp_of_t : t -> Sexplib.Sexp.t

val t_to_string : t -> string