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Module Biocaml_genomeMap.LMap (.ml)

A set of locations with an attached value on each of them

module LMap:
sig
type ('a, 'b) t 
val to_stream : ('a, 'b) t ->
       ('a Biocaml_genomeMap.location * 'b) Stream.t
val of_stream : ('a Biocaml_genomeMap.location * 'b) Stream.t ->
       ('a, 'b) t
val intersects : 'a Biocaml_genomeMap.location -> ('a, 'b) t -> bool
intersects loc lmap returns true if loc has a non-empty intersection with one of the locations in lmap, and returns false otherwise
val closest : 'a Biocaml_genomeMap.location ->
       ('a, 'b) t ->
       ('a Biocaml_genomeMap.location * 'b * int) option
closest loc lmap returns the location in lmap that is the closest to loc, along with its annotation and the actual (minimal) distance. Returns None if there is no location in lmap that comes from the same sequence than loc.
val intersecting_elems : 'a Biocaml_genomeMap.location ->
       ('a, 'b) t ->
       ('a Biocaml_genomeMap.location * 'b) Stream.t
intersecting_elems loc lmap returns an enumeration of elements in lmap whose location intersects with loc.
end