Index of types

A
alignment [Biocaml_sam]
B
background [Biocaml_pwm]	Probability distribution over an alphabet
bed_graph_value [Biocaml_wig]
C
char_seq [Biocaml_fasta]
cigar_op [Biocaml_sam]
collection [Biocaml_jaspar]
comment [Biocaml_wig]
confusion_matrix [Biocaml_roc]
content [Biocaml_track]	The "content" lines of the files.
count_matrix [Biocaml_pwm]	Type to represent gap-free alignments.
counter [Biocaml_accu]	The type of accumulators that count values
D
database [Biocaml_entrez]	Represents available databases
E
esearch_answer [Biocaml_entrez]	Represents the result of a request to esearch
F
fetched [Biocaml_entrez.Fetch]
fixed_step [Biocaml_wig]
I
idata [Biocaml_cel]
int_seq [Biocaml_fasta]
int_vec [Biocaml_mzData]	Vectors of OCaml ints.
irow [Biocaml_cel]	Represents row in intensity section
item [Biocaml_table.Row]	Type row elements (or “cells”).
item [Biocaml_sam]
item [Biocaml_lines]
item [Biocaml_fastq]	Type of FASTQ items.
item [Biocaml_fasta]
item [Biocaml_bed]	The type of BED data stream items.
item_to_raw [Biocaml_sam.Error]
item_to_raw_error [Biocaml_bam.Transform]
item_type [Biocaml_table.Row]	Definition of the type of a cell.
L
location [Biocaml_genomeMap]
M
motif [Biocaml_jaspar]
O
optional_content [Biocaml_sam]
optional_content_parsing [Biocaml_sam.Error]
optional_content_value [Biocaml_sam]
P
parse [Biocaml_sam.Error]	Errors possible during parsing.
parse_cigar_error [Biocaml_bam.Transform]
parse_error [Biocaml_wig]	The parsing errors.
parse_error [Biocaml_track]	The possible parsing errors.
parse_error [Biocaml_gff]	The possible parsing errors.
parse_optional_error [Biocaml_bam.Transform]
parsing [Biocaml_bed.Error]
parsing_base [Biocaml_bed.Error]
parsing_buffer [Biocaml_transform.Line_oriented]
parsing_spec [Biocaml_bed]	The specification of how to parse the remaining columns.
probe [Biocaml_bpmap]
R
range [Biocaml_rSet]
range [Biocaml_genomeMap]
raw_alignment [Biocaml_sam]	The contents of an alignment line.
raw_alignment [Biocaml_bam]
raw_bam_error [Biocaml_bam.Transform]
raw_item [Biocaml_sam]	The "items" of a parsed SAM file stream.
raw_item [Biocaml_fasta.Transform]	Lowest level items parsed by this module:
raw_item [Biocaml_bam]
raw_to_item [Biocaml_sam.Error]
raw_to_item_error [Biocaml_bam.Transform]
reference_sequence [Biocaml_sam]
relation [Biocaml_accu]
row [Biocaml_bpmap]	Type of information on one data row.
S
sb_algebraic_rule [Biocaml_sbml]
sb_compartment [Biocaml_sbml]
sb_delay [Biocaml_sbml]
sb_event [Biocaml_sbml]
sb_event_assignment [Biocaml_sbml]
sb_function_definition [Biocaml_sbml]
sb_generic_rule [Biocaml_sbml]
sb_initial_assignment [Biocaml_sbml]
sb_kinetic_law [Biocaml_sbml]
sb_math [Biocaml_sbml]
sb_math_container [Biocaml_sbml]
sb_math_operator [Biocaml_sbml]
sb_model [Biocaml_sbml]
sb_parameter [Biocaml_sbml]
sb_reaction [Biocaml_sbml]
sb_rule [Biocaml_sbml]
sb_species [Biocaml_sbml]
sb_species_ref [Biocaml_sbml]
sb_trigger [Biocaml_sbml]
sb_unit [Biocaml_sbml]
sb_unit_definition [Biocaml_sbml]
section [Biocaml_bar]
spectrum [Biocaml_mzData]	Individual mass spectrum.
stream_item [Biocaml_gff]	The items being output by the parser.
string_to_raw [Biocaml_sam.Error]	The possible errors one can get while parsing SAM files.
string_to_raw_item [Biocaml_fasta.Error]	Errors raised when converting a string to a `raw_item`.
T
t [Biocaml_iset]
t [Biocaml_wig]	The most general type that the default parser outputs.
t [Biocaml_transform.Printer_queue]
t [Biocaml_transform]	Type of a buffered transform converting `'input`s to `'output`s.
t [Biocaml_tags]
t [Biocaml_track]	The type of the parser "track" lines.
t [Biocaml_table.Row]	A single row.
t [Biocaml_streamable.S2]
t [Biocaml_streamable.S]	Type of the datastructure.
t [Biocaml_stream]	Type of streams holding values of type `'a`.
t [Biocaml_strandName]	Type of strand.
t [Biocaml_solexa_score]
t [Biocaml_sgr]
t [Biocaml_seq]	Type of a sequence
t [Biocaml_sam.Flags]
t [Biocaml_rSet]	Type of a set of integers.
t [Biocaml_romanNum]	Type of a roman numeral.
t [Biocaml_range]	Type of a range.
t [Biocaml_pwm]	Representation of a PWM
t [Biocaml_pos]
t [Biocaml_phred_score]
t [Biocaml_msg.Tree]
t [Biocaml_mzData.Precursor]
t [Biocaml_lines.Buffer]
t [Biocaml_lines.Error]
t [Biocaml_line]	A line is simply a string, possibly empty, that does not contain a newline character.
t [Biocaml_interval_tree]
t [Biocaml_histogram]	The type of a histogram whose bin limits are of type `'a`.
t [Biocaml_gff]	The type of the GFF records/rows.
t [Biocaml_genomeMap.LMap_spec]
t [Biocaml_genomeMap.Signal]
t [Biocaml_genomeMap.LMap]
t [Biocaml_genomeMap.LSet]
t [Biocaml_genomeMap.Selection]
t [Biocaml_fastq.Error]
t [Biocaml_fasta.Error]	Union of all errors.
t [Biocaml_entrez.Make.Gene]
t [Biocaml_entrez.Make.Pubmed]
t [Biocaml_entrez.Make.PubmedSummary]
t [Biocaml_entrez.Make.Gene_ref]
t [Biocaml_entrez.Make.Dbtag]
t [Biocaml_entrez.Make.Object_id]
t [Biocaml_cel]	The type of a CEL file.
t [Biocaml_bpmap]	Type of a BPMAP file.
t [Biocaml_bar]	Type of a BAR file, which can be thought of as a header plus set of sections.
t [Biocaml_accu.Relation]
t [Biocaml_accu.Counter]
t [Biocaml_accu]	General type for accumulators: `'instance`s are mapped to `'bin`s, and the `'accu`mulated value for a `'bin` is updated with an `'increment`
t_type [Biocaml_table.Row]	Definition of the type of a row.
tag [Biocaml_wig]
tag [Biocaml_gff]
U
unzip_error [Biocaml_zip.Transform]	The possible unzipping errors.
V
variable_step [Biocaml_wig]
vec [Biocaml_mzData]	Vectors of 64 bits floats.