| Biocaml | |
| Biocaml_msg |
Consistent printing of errors, warnings, and bugs.
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| Biocaml_pos |
File positions.
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| Biocaml_std | |
| Biocaml_about |
General information about the Biocaml library.
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| Biocaml_accu |
A datastructure (based on Hashtbl) to accumulate values.
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| Biocaml_bar |
Affymetrix's BAR files.
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| Biocaml_bed |
BED data.
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| Biocaml_bpmap |
Affymetrix's BPMAP files.
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| Biocaml_cel |
Affymetrix's CEL files.
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| Biocaml_chrName |
Chromosome names.
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| Biocaml_comments |
Comment lines.
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| Biocaml_common |
Commonly needed values; the 'Pervasives' of Biocaml.
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| Biocaml_fasta |
FASTA files.
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| Biocaml_fastq |
FASTQ data.
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| Biocaml_genomeMap |
Indicator function on a genome
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| Biocaml_gff |
GFF files.
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| Biocaml_histogram |
Histograms with polymorphic bin types.
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| Biocaml_intervalTree |
Interval tree (data structure)
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| Biocaml_invokeCmdline | |
| Biocaml_math |
Numeric mathematics.
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| Biocaml_phredScore |
PHRED quality scores.
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| Biocaml_pwm |
Position-weight matrix
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| Biocaml_range |
Ranges of contiguous integers (integer intervals).
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| Biocaml_roc |
Performance measurement for binary classification.
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| Biocaml_romanNum |
Roman numerals.
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| Biocaml_rSet |
Efficient integer sets when many elements expected to be large contiguous sequences of integers.
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| Biocaml_sam |
SAM files.
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| Biocaml_sbml |
SBML file parser.
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| Biocaml_seq |
Nucleic acid sequences.
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| Biocaml_solexaScore |
Solexa quality scores.
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| Biocaml_sgr |
Sequence Graph (SGR) files.
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| Biocaml_strandName |
Strand names.
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| Biocaml_table |
Tabular data as defined by principal tag 'table'.
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| Biocaml_track |
Track files in UCSC Genome Browser format.
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| Biocaml_tags |
Classification of data formats.
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| Biocaml_util |
Miscellaneous functions that don't fit elsewhere.
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| Biocaml_wig |
WIG data.
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| Biocaml_mzData |
Read mzData files (mass spectrometry data format).
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