Index of types

A
alignment [Biocaml_sam]
attribute [Biocaml_gff]
B
background [Biocaml_pwm]	Probability distribution over an alphabet
block [Biocaml_track]	A block of information.
C
columns [Biocaml_table]	All column names occurring in a file, in order that they occur.
confusion_matrix [Biocaml_roc]
count_matrix [Biocaml_pwm]	Type to represent gap-free alignments.
counter [Biocaml_accu]	The type of accumulators that count values
F
format [Biocaml_wig]
G
getter [Biocaml_table]	A function `get` of type `getter` can be used as `get r c` to get the value of the column named `c` in row `r`.
H
header [Biocaml_sam]
header_line [Biocaml_sam]
I
idata [Biocaml_cel]
int_vec [Biocaml_mzData]	Vectors of OCaml ints.
irow [Biocaml_cel]	Represents row in intensity section
L
location [Biocaml_genomeMap]
P
probe [Biocaml_bpmap]
pt [Biocaml_wig]	A data point is a 4-tuple `(chr,lo,hi,x)`, where `x` is the value assigned to interval `[lo, hi]`, inclusive of end-points, on chromosome `chr`.
R
range [Biocaml_rSet]
range [Biocaml_genomeMap]
record [Biocaml_fastq]	Each record in a fastq file consists of 4 fields: title, sequence, another title, and a quality score.
record [Biocaml_fasta]	Header and content.
record_type_code [Biocaml_sam]	String is exactly three characters, matching the regular expression '@`A-Za-zA-Za-z`'.
recordi [Biocaml_fasta]	Header and integers.
row [Biocaml_table]	Data row.
row [Biocaml_gff]	Type of information on a row.
row [Biocaml_bpmap]	Type of information on one data row.
S
sb_algebraic_rule [Biocaml_sbml]
sb_compartment [Biocaml_sbml]
sb_delay [Biocaml_sbml]
sb_event [Biocaml_sbml]
sb_event_assignment [Biocaml_sbml]
sb_function_definition [Biocaml_sbml]
sb_generic_rule [Biocaml_sbml]
sb_initial_assignment [Biocaml_sbml]
sb_kinetic_law [Biocaml_sbml]
sb_math [Biocaml_sbml]
sb_math_container [Biocaml_sbml]
sb_math_operator [Biocaml_sbml]
sb_model [Biocaml_sbml]
sb_parameter [Biocaml_sbml]
sb_reaction [Biocaml_sbml]
sb_rule [Biocaml_sbml]
sb_species [Biocaml_sbml]
sb_species_ref [Biocaml_sbml]
sb_trigger [Biocaml_sbml]
sb_unit [Biocaml_sbml]
sb_unit_definition [Biocaml_sbml]
section [Biocaml_bar]
spectrum [Biocaml_mzData]	Individual mass spectrum.
strand [Biocaml_gff]
T
t [Biocaml_mzData.Precursor]
t [Biocaml_intervalTree]
t [Biocaml_pos]
t [Biocaml_msg.Tree]
t [Biocaml_wig]	Type of WIG data.
t [Biocaml_tags]	Collection of tags, which classify a data format.
t [Biocaml_table]	A table consists of: comments (optional), column names, a getter function, an enumeration of the rows in the table
t [Biocaml_track.BrowserLines]	Type of a sequence of browser lines.
t [Biocaml_track.TrackLine]	Type of a track line.
t [Biocaml_track]	Type of a track file.
t [Biocaml_strandName]	Type of strand.
t [Biocaml_solexaScore]
t [Biocaml_sgr]
t [Biocaml_seq]	Type of a sequence
t [Biocaml_rSet]	Type of a set of integers.
t [Biocaml_romanNum]	Type of a roman numeral.
t [Biocaml_range]	Type of a range.
t [Biocaml_pwm]	Representation of a PWM
t [Biocaml_phredScore]
t [Biocaml_histogram]	The type of a histogram whose bin limits are of type `'a`.
t [Biocaml_gff]	The type representing a GFF file.
t [Biocaml_genomeMap.LMap_spec]
t [Biocaml_genomeMap.LSet]
t [Biocaml_genomeMap.Signal]
t [Biocaml_genomeMap.LMap]
t [Biocaml_genomeMap.Selection]
t [Biocaml_comments]	Sequence of comment lines.
t [Biocaml_cel]	The type of a CEL file.
t [Biocaml_bpmap]	Type of a BPMAP file.
t [Biocaml_bar]	Type of a BAR file, which can be thought of as a header plus set of sections.
t [Biocaml_accu.Counter]
t [Biocaml_accu]	General type for accumulators: `'instance`s are mapped to `'bin`s, and the `'accu`mulated value for a `'bin` is updated with an `'increment`
V
vec [Biocaml_mzData]	Vectors of 64 bits floats.